- C. Gorba, O. Miyashita and F. Tama. (2008) Normal Mode Flexible Fitting of High-Resolution Structure of Biological Molecules toward 1 Dimensional Low-Resolution Data. Biophys. J. 94:1589-1599
- O. Miyashita and F. Tama (2007) Normal mode analysis techniques in structural biology. In: ENCYCLOPEDIA OF LIFE SCIENCES. John Wiley & Sons, Ltd: Chichester http://www.els.net/ [DOI: 10.1002/9780470015902.a0020204]
- Sherman MB, Guenther RH, Tama F, Sit TL, Brooks III CL, Mikhailov AM, Orlova EV, Baker TS, Lommel SA. (2006) Removal of divalent cations induces structural transitions in Red clover necrotic mosaic virus, revealing a potential mechanism for RNA release. J. Virol., 80: 10395-10406
Tama F, Ren G, Brooks III CL, Mitra AK. (2006) Model of the toxic complex of anthrax: Responsive conformational changes in both the lethal factor and the protective antigen heptamer. Prot. Sci., 15: 2190-2200.
- F. Tama and CL. Brooks III. (2006) Symmetry, form and shape: guiding principles for robustness in macromolecular machines. Annual Review of Biophysics & Biomolecular Structure, 35: 115-133
- R. Konecny, J. Trylska, F. Tama, D. Zhang , NA. Baker, CL. Brooks III and JA. McCammon. (2006) Electrostatic properties of cowpea chlorotic mottle virus and cucumber mosaic virus capsids. Biopolymers
- K. Mitra, C. Scaffitzel, T. Shaikh, F. Tama, S. Jenni, CL. Brooks III, N. Ban and J. Frank. (2005) Structure of the E. coli protein-conducting channel bound to a translating ribosome. Nature 438: 318-324
- F. Tama and CL. Brooks III. (2005) Diversity and identity of mechanical properties of icosahedral viral capsids studied with elastic network normal mode analysis. J. Mol. Biol. 345: 299-314
- F. Tama, M. Feig, CL. Brooks, III and KA. Taylor. (2005) The Requirement for Mechanical Coupling Between Head and S2 Domains in Smooth Muscle Myosin ATPase Regulation and its Implications for Dimeric Motor Function. J. Mol. Biol 345: 837-854
- S. Falke, F. Tama, CL. Brooks III, EP. Gogol and MT. Fisher. (2005) The 13 Å Structure of a Chaperonin GroEL-Protein Substrate complex by Cryo-Electron Microscopy. J. Mol. Biol. 348: 219-230
- F. Tama, O. Miyashita and CL. Brooks, III. (2004) Flexible multi-scale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis. J. Mol. Biol. 337: 985-999
- F. Tama, O. Miyashita and CL. Brooks III. (2004) NMFF: Flexible high-resolution annotation of low-resolution experimental data from cryo-EM maps using normal mode analysis. J. Struct. Biol. 147: 315-326
- J. Trylska, R. Konecny, F. Tama, CL. Brooks III and JA McCammon. (2004) Motions of the ribosome modulate electrostatic properties. Biopolymers 74: 423-431
- W. Wriggers, P. Chacon, J. Kovacs, F. Tama and S. Birmanns. (2004) Topology representing Neural Networks reconcile biomolecular shape structure and dynamics. Neurocomputing 56: 365-379
- P. Chacon, F. Tama and W. Wriggers. (2003) Mega-dalton biomolecular motion captured from electron microscopy reconstructions. J. Mol. Biol. 326: 485-492
- F. Tama, M. Valle, J. Frank and CL Brooks III. (2003) Understanding the ratchet-like inter-subunit reorganization of the ribosome. Proc. Natl. Acad. Sci. USA 100: 9319-9323
- F. Tama. (2003) Normal mode analysis with simplified models to investigate the global dynamics of biological systems. Prot. Pept. Let. 10: 119-132
- F. Tama, W. Wriggers and CL. Brooks III. (2002) Exploring global distortions of biological macromolecules from low-resolution structural information and elastic network theory. J. Mol. Biol. 321: 297-305
- F. Tama and CL. Brooks III. (2002) Exploring Large-Scale Conformational Changes in Virus Maturation. J. Mol. Biol. 318: 733-747
- F. Tama and Y.H. Sanejouand. (2001) Conformational change of Proteins arising from Normal Mode Analysis. Protein. Eng. 14: 1-6
- F. Tama, F.X. Gadea, O. Marques and Y.H. Sanejouand. (2000) A building block approach for determining low-frequency normal modes of macromolecules. Proteins 41: 1-7
- F. Tama, O. Miyashita, A. Kitao and N. Go. (2000) Molecular dynamics simulation shows large volume fluctuation of proteins. Eur. Biophys. J. 29: 472-480
BOOK CHAPTER
- F. Tama and CL Brooks III. (2006)
Unveiling molecular mechanisms of biological functions in large macromolecular assemblies using elastic network normal mode analysis.
Normal Mode Analysis: Theory and Applications to Biological and Chemical Systems, Mathematical Biology Series, CRC Press
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